| variable | raw | site_filtered | gt_filtered |
|---|---|---|---|
| TOTAL_SNPS | 16,643,754.00 | 9,115,052.00 | 5,126,585.00 |
| NUM_IN_DB_SNP | 12,117,419.00 | 8,486,322.00 | 4,846,921.00 |
| NOVEL_SNPS | 4,526,335.00 | 628,730.00 | 279,664.00 |
| PCT_DBSNP | 0.73 | 0.93 | 0.95 |
| DBSNP_TITV | 1.94 | 2.07 | 2.30 |
| NOVEL_TITV | 1.07 | 1.53 | 1.82 |
| TOTAL_INDELS | 3,454,237.00 | 0.00 | 0.00 |
| TOTAL_MULTIALLELIC_SNPS | 856,605.00 | 0.00 | 0.00 |
| Linie | SAMPLE_ALIAS | target_cvg | HET_HOMVAR_RATIO | TOTAL_HET_DEPTH | TOTAL_SNPS | NUM_IN_DB_SNP | NOVEL_SNPS | FILTERED_SNPS | PCT_DBSNP | DBSNP_TITV | NOVEL_TITV | TOTAL_INDELS | NOVEL_INDELS | FILTERED_INDELS | PCT_DBSNP_INDELS | NUM_IN_DB_SNP_INDELS | DBSNP_INS_DEL_RATIO | NOVEL_INS_DEL_RATIO | TOTAL_MULTIALLELIC_SNPS | NUM_IN_DB_SNP_MULTIALLELIC | TOTAL_COMPLEX_INDELS | NUM_IN_DB_SNP_COMPLEX_INDELS | SNP_REFERENCE_BIAS | NUM_SINGLETONS |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| DUK | H07788 | 30x | 0.193108 | 13843032 | 1984239 | 1948555 | 35684 | 0 | 0.982016 | 2.271589 | 1.960591 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505178 | 65 |
| DUK | H07789 | 30x | 0.230014 | 14312572 | 1993501 | 1956434 | 37067 | 0 | 0.981406 | 2.273841 | 1.954017 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504956 | 92 |
| DUK | H07790 | 30x | 0.193317 | 8649822 | 1996228 | 1961397 | 34831 | 0 | 0.982552 | 2.271863 | 1.888382 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.506207 | 74 |
| DUK | H07791 | 30x | 0.166171 | 9391113 | 2012670 | 1975383 | 37287 | 0 | 0.981474 | 2.261462 | 1.890241 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.507743 | 108 |
| DUK | H07792 | 30x | 0.201879 | 9876492 | 1998241 | 1958297 | 39944 | 0 | 0.980010 | 2.268928 | 1.955312 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.506036 | 101 |
| DUK | H07793 | 30x | 0.164784 | 8169416 | 1925909 | 1887360 | 38549 | 0 | 0.979984 | 2.273371 | 1.956892 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.507314 | 125 |
| DUK | H07794 | 30x | 0.195816 | 9217169 | 1957825 | 1922103 | 35722 | 0 | 0.981754 | 2.267360 | 1.887560 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.507682 | 116 |
| DUK | H07795 | 30x | 0.203880 | 7919034 | 2055927 | 2017391 | 38536 | 0 | 0.981256 | 2.259629 | 1.918289 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.506481 | 116 |
| DUK | H07796 | 30x | 0.204992 | 9374049 | 1996249 | 1958001 | 38248 | 0 | 0.980840 | 2.271361 | 1.906162 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.508017 | 85 |
| DUK | H07797 | 30x | 0.225372 | 8461332 | 2037813 | 1999910 | 37903 | 0 | 0.981400 | 2.261166 | 1.899556 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.506414 | 94 |
| DUK | I34770 | 5x | 0.212805 | 4202237 | 1872118 | 1836581 | 35537 | 0 | 0.981018 | 2.271617 | 1.943998 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.502603 | 359 |
| DUK | I34771 | 5x | 0.204915 | 3737893 | 1807234 | 1772934 | 34300 | 0 | 0.981021 | 2.280271 | 1.909245 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.501216 | 457 |
| DUK | I34772 | 5x | 0.420702 | 1008814 | 493866 | 481845 | 12021 | 0 | 0.975659 | 2.378594 | 2.018835 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.483877 | 1023 |
| DUK | I34773 | 5x | 0.187163 | 3544032 | 1786022 | 1752406 | 33616 | 0 | 0.981178 | 2.292437 | 1.922622 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503592 | 505 |
| DUK | I34774 | 5x | 0.321020 | 1623954 | 849754 | 830218 | 19536 | 0 | 0.977010 | 2.368721 | 1.955969 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.490742 | 1306 |
| DUK | I34775 | 5x | 0.195923 | 2540813 | 1516900 | 1487527 | 29373 | 0 | 0.980636 | 2.301617 | 1.933779 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.499578 | 452 |
| DUK | I34776 | 5x | 0.196547 | 2875277 | 1451680 | 1422692 | 28988 | 0 | 0.980031 | 2.334791 | 1.927785 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.502224 | 1250 |
| DUK | I34777 | 5x | 0.222054 | 3394582 | 1688025 | 1654597 | 33428 | 0 | 0.980197 | 2.294002 | 1.958754 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.501252 | 602 |
| DUK | I34778 | 5x | 0.276850 | 3421077 | 1549234 | 1517886 | 31348 | 0 | 0.979765 | 2.308794 | 1.946518 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.499637 | 1118 |
| DUK | I34779 | 5x | 0.204549 | 3315333 | 1708789 | 1674518 | 34271 | 0 | 0.979944 | 2.294829 | 1.912715 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500896 | 820 |
| DUK | I34780 | 5x | 0.211713 | 4582506 | 1883370 | 1849364 | 34006 | 0 | 0.981944 | 2.275965 | 1.905006 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503507 | 475 |
| DUK | I34781 | 5x | 0.183519 | 2703516 | 1596308 | 1565007 | 31301 | 0 | 0.980392 | 2.301703 | 1.923142 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500308 | 836 |
| DUK | I34782 | 5x | 0.223184 | 3125949 | 1629008 | 1596833 | 32175 | 0 | 0.980249 | 2.294681 | 1.933266 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.498060 | 421 |
| DUK | I34783 | 5x | 0.228496 | 3366351 | 1646831 | 1615093 | 31738 | 0 | 0.980728 | 2.289502 | 1.928670 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.501269 | 1020 |
| DUK | I34784 | 5x | 0.275089 | 3008179 | 1393505 | 1366100 | 27405 | 0 | 0.980334 | 2.322510 | 1.902457 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.498359 | 1186 |
| DUC | H07758 | 30x | 0.127951 | 6588794 | 2100074 | 2059647 | 40427 | 0 | 0.980750 | 2.268233 | 1.884758 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.508311 | 101 |
| DUC | H07759 | 30x | 0.162971 | 6457986 | 2162126 | 2119578 | 42548 | 0 | 0.980321 | 2.270005 | 1.871566 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.507736 | 143 |
| DUC | H07760 | 30x | 0.150750 | 8132832 | 2149544 | 2106966 | 42578 | 0 | 0.980192 | 2.271463 | 1.891545 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.508154 | 119 |
| DUC | H07761 | 30x | 0.170101 | 7884641 | 2150025 | 2106790 | 43235 | 0 | 0.979891 | 2.276674 | 1.915178 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.508087 | 88 |
| DUC | H07762 | 30x | 0.162103 | 9458716 | 2138775 | 2095693 | 43082 | 0 | 0.979857 | 2.277614 | 1.910946 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.506580 | 105 |
| DUC | H07763 | 30x | 0.160885 | 9944922 | 2110024 | 2068917 | 41107 | 0 | 0.980518 | 2.282989 | 1.897512 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.502476 | 79 |
| DUC | H07764 | 30x | 0.148103 | 9039938 | 2141621 | 2099896 | 41725 | 0 | 0.980517 | 2.275529 | 1.920896 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.506702 | 84 |
| DUC | H07765 | 30x | 0.622541 | 25008545 | 2231911 | 2188027 | 43884 | 0 | 0.980338 | 2.274215 | 1.892052 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.472609 | 94 |
| DUC | H07766 | 30x | 0.169709 | 7726999 | 2181497 | 2136887 | 44610 | 0 | 0.979551 | 2.277102 | 1.904675 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.507936 | 102 |
| DUC | H07767 | 30x | 0.185156 | 9100502 | 2075787 | 2036043 | 39744 | 0 | 0.980853 | 2.274829 | 1.881044 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.486300 | 104 |
| DUC | I34755 | 5x | 0.195965 | 1924614 | 1319092 | 1291673 | 27419 | 0 | 0.979214 | 2.294219 | 1.881055 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.495421 | 290 |
| DUC | I34756 | 5x | 0.159771 | 3809528 | 2043270 | 2004645 | 38625 | 0 | 0.981097 | 2.286891 | 1.888282 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504812 | 184 |
| DUC | I34757 | 5x | 0.180106 | 2433182 | 1587799 | 1555164 | 32635 | 0 | 0.979446 | 2.309303 | 1.951791 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500217 | 509 |
| DUC | I34758 | 5x | 0.231745 | 2491121 | 1450455 | 1421571 | 28884 | 0 | 0.980086 | 2.304158 | 1.907297 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.497620 | 338 |
| DUC | I34759 | 5x | 0.224300 | 2656400 | 1526533 | 1493753 | 32780 | 0 | 0.978527 | 2.309757 | 1.909123 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.497635 | 514 |
| DUC | I34760 | 5x | 0.213459 | 2380181 | 1458690 | 1429232 | 29458 | 0 | 0.979805 | 2.282625 | 1.865564 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.496816 | 284 |
| DUC | I34761 | 5x | 0.283048 | 1437735 | 864950 | 845621 | 19329 | 0 | 0.977653 | 2.314068 | 1.855518 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.487741 | 314 |
| DUC | I34762 | 5x | 0.190719 | 2113944 | 1421699 | 1392593 | 29106 | 0 | 0.979527 | 2.282196 | 1.878647 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.496752 | 230 |
| DUC | I34763 | 5x | 0.204567 | 2481696 | 1522532 | 1491029 | 31503 | 0 | 0.979309 | 2.323731 | 1.927516 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.497896 | 438 |
| DUC | I34764 | 5x | 0.225488 | 1368068 | 859670 | 841208 | 18462 | 0 | 0.978524 | 2.420574 | 2.048547 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.492182 | 417 |
| DUC | I34765 | 5x | 0.156223 | 2717567 | 1774821 | 1739008 | 35813 | 0 | 0.979822 | 2.291045 | 1.897492 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504236 | 532 |
| DUC | I34766 | 5x | 0.291870 | 2446649 | 1292106 | 1266144 | 25962 | 0 | 0.979907 | 2.302479 | 1.839239 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.492352 | 402 |
| DUC | I34767 | 5x | 0.177723 | 2900952 | 1780527 | 1745928 | 34599 | 0 | 0.980568 | 2.270906 | 1.872240 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.501215 | 328 |
| DUC | I34768 | 5x | 0.165667 | 2915965 | 1801284 | 1764774 | 36510 | 0 | 0.979731 | 2.304765 | 1.904073 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503384 | 579 |
| DUC | I34769 | 5x | 0.188868 | 3715088 | 1954480 | 1915500 | 38980 | 0 | 0.980056 | 2.289276 | 1.900729 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.502915 | 293 |
| DU6 | H07748 | 30x | 0.245382 | 12466451 | 2353297 | 2301866 | 51431 | 0 | 0.978145 | 2.274999 | 1.926539 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505848 | 212 |
| DU6 | H07749 | 30x | 0.238745 | 14716687 | 2339176 | 2288809 | 50367 | 0 | 0.978468 | 2.280116 | 1.939594 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.506193 | 174 |
| DU6 | H07750 | 30x | 0.225888 | 9682466 | 2363475 | 2313691 | 49784 | 0 | 0.978936 | 2.276579 | 1.907944 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.506560 | 166 |
| DU6 | H07751 | 30x | 0.252863 | 15194800 | 2396097 | 2345572 | 50525 | 0 | 0.978914 | 2.283294 | 1.912607 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505198 | 317 |
| DU6 | H07752 | 30x | 0.230168 | 17419185 | 2322473 | 2276453 | 46020 | 0 | 0.980185 | 2.287482 | 1.934388 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505947 | 87 |
| DU6 | H07753 | 30x | 0.239785 | 9965774 | 2367014 | 2319198 | 47816 | 0 | 0.979799 | 2.281460 | 1.887440 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.506690 | 485 |
| DU6 | H07754 | 30x | 0.271358 | 9542157 | 2338535 | 2288220 | 50315 | 0 | 0.978484 | 2.281026 | 1.905191 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505452 | 179 |
| DU6 | H07755 | 30x | 0.228145 | 15571858 | 2332730 | 2284657 | 48073 | 0 | 0.979392 | 2.284035 | 1.932353 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504514 | 89 |
| DU6 | H07756 | 30x | 0.229069 | 12658741 | 2340968 | 2294004 | 46964 | 0 | 0.979938 | 2.281245 | 1.910330 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505878 | 84 |
| DU6 | H07757 | 30x | 0.287141 | 15198392 | 2380179 | 2328356 | 51823 | 0 | 0.978227 | 2.282986 | 1.926200 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.506138 | 99 |
| DU6 | I34725 | 5x | 0.800817 | 751285 | 274657 | 265469 | 9188 | 0 | 0.966547 | 2.353109 | 1.758331 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.473941 | 1622 |
| DU6 | I34726 | 5x | 0.448539 | 2903827 | 1251147 | 1221067 | 30080 | 0 | 0.975958 | 2.290354 | 1.877643 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.487895 | 569 |
| DU6 | I34727 | 5x | 0.733747 | 992507 | 382456 | 370095 | 12361 | 0 | 0.967680 | 2.351278 | 1.752394 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.478462 | 1995 |
| DU6 | I34728 | 5x | 0.466856 | 1072937 | 498448 | 482584 | 15864 | 0 | 0.968173 | 2.367836 | 1.795419 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.485159 | 3340 |
| DU6 | I34729 | 5x | 0.365579 | 2546146 | 1221349 | 1192846 | 28503 | 0 | 0.976663 | 2.326072 | 1.920689 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.490724 | 901 |
| DU6 | I34730 | 5x | 0.361222 | 2689070 | 1249576 | 1219525 | 30051 | 0 | 0.975951 | 2.332290 | 1.904320 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.493802 | 1808 |
| DU6 | I34731 | 5x | 0.482630 | 1729918 | 780480 | 760382 | 20098 | 0 | 0.974249 | 2.335097 | 1.921221 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.483195 | 647 |
| DU6 | I34732 | 5x | 0.449463 | 1431749 | 667214 | 650474 | 16740 | 0 | 0.974911 | 2.353910 | 1.906755 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.481177 | 702 |
| DU6 | I34733 | 5x | 0.840808 | 1566566 | 555335 | 540234 | 15101 | 0 | 0.972807 | 2.322656 | 1.870367 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.476143 | 461 |
| DU6 | I34734 | 5x | 0.509310 | 2024090 | 867722 | 845862 | 21860 | 0 | 0.974808 | 2.321078 | 1.861631 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.483141 | 1094 |
| DU6 | I34735 | 5x | 0.566012 | 2271007 | 901271 | 878298 | 22973 | 0 | 0.974510 | 2.335541 | 1.901730 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.485806 | 865 |
| DU6 | I34736 | 5x | 0.453620 | 2734717 | 1165982 | 1138531 | 27451 | 0 | 0.976457 | 2.329963 | 1.918146 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.487435 | 544 |
| DU6 | I34737 | 5x | 0.440219 | 2644235 | 1175118 | 1147007 | 28111 | 0 | 0.976078 | 2.309635 | 1.885251 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.487148 | 427 |
| DU6 | I34738 | 5x | 0.498795 | 2176913 | 941278 | 918411 | 22867 | 0 | 0.975706 | 2.318858 | 1.918571 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.483594 | 359 |
| DU6 | I34739 | 5x | 0.632703 | 2025331 | 778014 | 757250 | 20764 | 0 | 0.973312 | 2.339242 | 1.858087 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.482926 | 1288 |
| DU6P | H07768 | 30x | 0.332913 | 12045910 | 2350360 | 2306581 | 43779 | 0 | 0.981373 | 2.279888 | 1.887987 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505374 | 155 |
| DU6P | H07769 | 30x | 0.382665 | 11929963 | 2387319 | 2338700 | 48619 | 0 | 0.979634 | 2.280471 | 1.930268 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504790 | 199 |
| DU6P | H07770 | 30x | 0.610443 | 16982973 | 2438805 | 2391810 | 46995 | 0 | 0.980730 | 2.285228 | 1.905050 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.496945 | 194 |
| DU6P | H07771 | 30x | 0.641021 | 23300704 | 2501295 | 2450294 | 51001 | 0 | 0.979610 | 2.288734 | 1.930587 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.509459 | 81 |
| DU6P | H07772 | 30x | 0.270381 | 27848116 | 2161368 | 2121398 | 39970 | 0 | 0.981507 | 2.291602 | 1.971305 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.502545 | 36 |
| DU6P | H07773 | 30x | 0.561269 | 37865170 | 2483555 | 2436376 | 47179 | 0 | 0.981003 | 2.292654 | 1.932558 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500419 | 42 |
| DU6P | H07774 | 30x | 0.405592 | 14308906 | 2328083 | 2284162 | 43921 | 0 | 0.981134 | 2.281022 | 1.863915 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.495962 | 77 |
| DU6P | H07775 | 30x | 0.344869 | 12011639 | 2335135 | 2290731 | 44404 | 0 | 0.980984 | 2.285950 | 1.893523 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504207 | 121 |
| DU6P | H07776 | 30x | 0.287941 | 12834776 | 2300934 | 2254472 | 46462 | 0 | 0.979807 | 2.286493 | 1.954095 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504991 | 95 |
| DU6P | H07777 | 30x | 0.264760 | 10959458 | 2296865 | 2253548 | 43317 | 0 | 0.981141 | 2.280331 | 1.895328 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505130 | 163 |
| DU6P | I34740 | 5x | 0.327534 | 6123723 | 2113269 | 2071466 | 41803 | 0 | 0.980219 | 2.295286 | 1.931281 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500671 | 346 |
| DU6P | I34741 | 5x | 0.522590 | 2587111 | 871818 | 848133 | 23685 | 0 | 0.972833 | 2.378881 | 1.980745 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.495123 | 3224 |
| DU6P | I34742 | 5x | 0.352973 | 6762399 | 2123070 | 2081983 | 41087 | 0 | 0.980647 | 2.312417 | 1.936674 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.501448 | 542 |
| DU6P | I34743 | 5x | 0.306478 | 5880026 | 2086024 | 2046441 | 39583 | 0 | 0.981025 | 2.302736 | 1.900278 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.501457 | 359 |
| DU6P | I34744 | 5x | 0.302847 | 6568412 | 2183664 | 2139599 | 44065 | 0 | 0.979821 | 2.300450 | 1.928880 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.502551 | 342 |
| DU6P | I34745 | 5x | 0.392424 | 4725669 | 1772629 | 1738656 | 33973 | 0 | 0.980835 | 2.314106 | 1.920399 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.496007 | 399 |
| DU6P | I34746 | 5x | 0.330426 | 5047338 | 1944832 | 1906157 | 38675 | 0 | 0.980114 | 2.307113 | 1.927263 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.497537 | 399 |
| DU6P | I34747 | 5x | 0.369130 | 4826929 | 1834071 | 1796238 | 37833 | 0 | 0.979372 | 2.291163 | 1.882075 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.496152 | 412 |
| DU6P | I34748 | 5x | 0.381287 | 5541094 | 1920762 | 1881460 | 39302 | 0 | 0.979538 | 2.316254 | 1.966636 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.497652 | 1509 |
| DU6P | I34749 | 5x | 0.315853 | 5838801 | 2033949 | 1992965 | 40984 | 0 | 0.979850 | 2.306415 | 1.953376 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500597 | 536 |
| DU6P | I34750 | 5x | 0.311820 | 5196313 | 1964865 | 1925249 | 39616 | 0 | 0.979838 | 2.310144 | 1.909305 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500344 | 251 |
| DU6P | I34751 | 5x | 0.310216 | 5945974 | 2108659 | 2066226 | 42433 | 0 | 0.979877 | 2.301097 | 1.932886 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500881 | 321 |
| DU6P | I34752 | 5x | 0.340655 | 7718048 | 2255414 | 2212812 | 42602 | 0 | 0.981111 | 2.293448 | 1.902241 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503066 | 233 |
| DU6P | I34753 | 5x | 0.599309 | 1826196 | 681507 | 663338 | 18169 | 0 | 0.973340 | 2.405680 | 1.914501 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.488677 | 2721 |
| DU6P | I34754 | 5x | 0.318127 | 8287768 | 2319638 | 2276185 | 43453 | 0 | 0.981267 | 2.287024 | 1.900541 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.502811 | 206 |
| DUhLB | H07778 | 30x | 0.497382 | 17576553 | 2434728 | 2380935 | 53793 | 0 | 0.977906 | 2.284402 | 1.936139 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.506004 | 177 |
| DUhLB | H07779 | 30x | 0.414630 | 15858855 | 2419533 | 2368206 | 51327 | 0 | 0.978786 | 2.282837 | 1.960035 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505811 | 128 |
| DUhLB | H07780 | 30x | 0.470043 | 26134617 | 2425902 | 2372496 | 53406 | 0 | 0.977985 | 2.288552 | 1.962063 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505551 | 132 |
| DUhLB | H07781 | 30x | 0.473947 | 31473031 | 2418045 | 2367070 | 50975 | 0 | 0.978919 | 2.302670 | 1.982913 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504025 | 136 |
| DUhLB | H07782 | 30x | 0.405033 | 34101108 | 2350066 | 2301568 | 48498 | 0 | 0.979363 | 2.292178 | 2.035869 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503567 | 84 |
| DUhLB | H07783 | 30x | 0.416766 | 26174499 | 2386651 | 2333379 | 53272 | 0 | 0.977679 | 2.289340 | 1.984593 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505190 | 115 |
| DUhLB | H07784 | 30x | 0.484159 | 17764891 | 2372608 | 2318846 | 53762 | 0 | 0.977341 | 2.285359 | 1.937654 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.505511 | 150 |
| DUhLB | H07785 | 30x | 0.527376 | 19625540 | 2496878 | 2443601 | 53277 | 0 | 0.978663 | 2.286376 | 1.973379 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504537 | 148 |
| DUhLB | H07786 | 30x | 0.451816 | 13452857 | 2320048 | 2271680 | 48368 | 0 | 0.979152 | 2.296580 | 1.974845 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504115 | 1151 |
| DUhLB | H07787 | 30x | 0.475214 | 19259193 | 2450158 | 2394702 | 55456 | 0 | 0.977366 | 2.295288 | 1.965086 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504866 | 126 |
| DUhLB | I34785 | 5x | 0.497162 | 7596379 | 2101915 | 2057075 | 44840 | 0 | 0.978667 | 2.301425 | 2.010810 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.499680 | 441 |
| DUhLB | I34786 | 5x | 0.553695 | 6408395 | 1864959 | 1823177 | 41782 | 0 | 0.977596 | 2.328411 | 2.018713 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.497445 | 1029 |
| DUhLB | I34787 | 5x | 0.551115 | 5473194 | 1575252 | 1539977 | 35275 | 0 | 0.977607 | 2.353776 | 1.975538 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.497192 | 1221 |
| DUhLB | I34788 | 5x | 0.432537 | 5547145 | 1876656 | 1835174 | 41482 | 0 | 0.977896 | 2.322731 | 2.014461 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.497235 | 571 |
| DUhLB | I34789 | 5x | 0.534553 | 7944292 | 1942831 | 1898972 | 43859 | 0 | 0.977425 | 2.337397 | 2.003424 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.499701 | 902 |
| DUhLB | I34790 | 5x | 0.491587 | 7766995 | 2105697 | 2058687 | 47010 | 0 | 0.977675 | 2.305917 | 1.977955 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.499126 | 291 |
| DUhLB | I34791 | 5x | 0.495271 | 6393317 | 1871825 | 1828164 | 43661 | 0 | 0.976675 | 2.330644 | 2.020059 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.498930 | 1061 |
| DUhLB | I34792 | 5x | 0.493844 | 6735102 | 1977983 | 1933735 | 44248 | 0 | 0.977630 | 2.316847 | 1.979262 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.499141 | 475 |
| DUhLB | I34793 | 5x | 0.455535 | 10612345 | 2351304 | 2300000 | 51304 | 0 | 0.978181 | 2.299445 | 1.969669 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503055 | 811 |
| DUhLB | I34794 | 5x | 0.510819 | 5372890 | 1611331 | 1573160 | 38171 | 0 | 0.976311 | 2.356533 | 2.029204 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.497576 | 1092 |
| DUhLB | I34795 | 5x | 0.551171 | 9688139 | 2268645 | 2220406 | 48239 | 0 | 0.978737 | 2.304859 | 1.954011 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.501528 | 429 |
| DUhLB | I34796 | 5x | 0.529655 | 8182201 | 2104028 | 2055745 | 48283 | 0 | 0.977052 | 2.314066 | 1.983010 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500407 | 943 |
| DUhLB | I34797 | 5x | 0.533709 | 7003741 | 1891356 | 1846341 | 45015 | 0 | 0.976200 | 2.330671 | 1.979547 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.499537 | 1055 |
| DUhLB | I34798 | 5x | 0.449878 | 7812860 | 2096205 | 2048419 | 47786 | 0 | 0.977204 | 2.308582 | 1.971027 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.501804 | 602 |
| DUhLB | I34799 | 5x | 0.542204 | 6326728 | 1880285 | 1837180 | 43105 | 0 | 0.977075 | 2.313655 | 1.959086 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.497776 | 615 |
| FZTDU | H07738 | 30x | 1.187596 | 51164568 | 2781961 | 2718004 | 63957 | 0 | 0.977010 | 2.280910 | 1.955636 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.504278 | 1362 |
| FZTDU | H07739 | 30x | 1.085203 | 29317382 | 2828714 | 2765079 | 63635 | 0 | 0.977504 | 2.285940 | 1.928844 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503960 | 2146 |
| FZTDU | H07740 | 30x | 1.167723 | 30091426 | 2708908 | 2649467 | 59441 | 0 | 0.978057 | 2.279149 | 1.934344 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503433 | 513 |
| FZTDU | H07741 | 30x | 1.067012 | 34542761 | 2739458 | 2679769 | 59689 | 0 | 0.978211 | 2.287435 | 1.993430 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503735 | 608 |
| FZTDU | H07742 | 30x | 1.121631 | 36750210 | 2837062 | 2773471 | 63591 | 0 | 0.977586 | 2.287014 | 1.988158 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503951 | 2285 |
| FZTDU | H07743 | 30x | 1.041063 | 44010614 | 2743999 | 2687949 | 56050 | 0 | 0.979574 | 2.287311 | 1.922772 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503867 | 531 |
| FZTDU | H07744 | 30x | 1.036236 | 42901972 | 2707721 | 2647072 | 60649 | 0 | 0.977601 | 2.295362 | 1.979124 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503917 | 1957 |
| FZTDU | H07745 | 30x | 1.114108 | 44995318 | 2792910 | 2734180 | 58730 | 0 | 0.978972 | 2.285599 | 1.913339 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503329 | 862 |
| FZTDU | H07746 | 30x | 1.172747 | 37926745 | 2689220 | 2628023 | 61197 | 0 | 0.977244 | 2.282313 | 1.953808 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503616 | 876 |
| FZTDU | H07747 | 30x | 1.071563 | 40349413 | 2780317 | 2720810 | 59507 | 0 | 0.978597 | 2.284800 | 1.938762 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.502662 | 2295 |
| FZTDU | I34710 | 5x | 1.123016 | 22279573 | 2672149 | 2614169 | 57980 | 0 | 0.978302 | 2.292682 | 1.940759 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.502780 | 356 |
| FZTDU | I34711 | 5x | 1.182405 | 13912971 | 2242753 | 2189946 | 52807 | 0 | 0.976454 | 2.317457 | 2.004666 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.498301 | 950 |
| FZTDU | I34712 | 5x | 1.383420 | 16377031 | 2252718 | 2202746 | 49972 | 0 | 0.977817 | 2.349430 | 1.971164 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.499820 | 1124 |
| FZTDU | I34713 | 5x | 1.027019 | 20878493 | 2710676 | 2650705 | 59971 | 0 | 0.977876 | 2.290733 | 1.946399 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503402 | 1401 |
| FZTDU | I34714 | 5x | 1.108162 | 16164092 | 2528424 | 2469593 | 58831 | 0 | 0.976732 | 2.301074 | 1.949218 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500143 | 676 |
| FZTDU | I34715 | 5x | 1.092839 | 18908999 | 2573407 | 2515300 | 58107 | 0 | 0.977420 | 2.302752 | 1.945109 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.501733 | 922 |
| FZTDU | I34716 | 5x | 1.220399 | 17396787 | 2184910 | 2135418 | 49492 | 0 | 0.977348 | 2.336836 | 1.981087 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500941 | 1483 |
| FZTDU | I34717 | 5x | 1.236633 | 16695940 | 2025763 | 1981208 | 44555 | 0 | 0.978006 | 2.347608 | 1.950467 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500150 | 1726 |
| FZTDU | I34718 | 5x | 1.060945 | 17940114 | 2593648 | 2534516 | 59132 | 0 | 0.977201 | 2.300856 | 1.955418 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.502280 | 565 |
| FZTDU | I34719 | 5x | 1.248269 | 11625591 | 2201611 | 2151585 | 50026 | 0 | 0.977278 | 2.307749 | 1.962222 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.497433 | 917 |
| FZTDU | I34720 | 5x | 1.183226 | 22034130 | 2721252 | 2661878 | 59374 | 0 | 0.978181 | 2.292382 | 1.927568 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.503291 | 1642 |
| FZTDU | I34721 | 5x | 1.277354 | 11341427 | 2162869 | 2113788 | 49081 | 0 | 0.977307 | 2.306638 | 1.984918 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.496083 | 1429 |
| FZTDU | I34722 | 5x | 1.109965 | 20108220 | 2572889 | 2515445 | 57444 | 0 | 0.977673 | 2.287751 | 1.954027 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.502527 | 729 |
| FZTDU | I34723 | 5x | 1.511955 | 14254984 | 1995876 | 1949815 | 46061 | 0 | 0.976922 | 2.354907 | 1.945830 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500148 | 3205 |
| FZTDU | I34724 | 5x | 1.279576 | 11208255 | 2173804 | 2124379 | 49425 | 0 | 0.977263 | 2.313321 | 1.979743 | 0 | 0 | 0 | ? | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.496288 | 2552 |
Population VCFs were produced from cohort final-VCF by extracting samples and removing fixed reference sites (GT==“RR”) and all-missing sites (GT==“./.”).